Index

A

analyze_regions() (in module xpectrass.utils.region_selection) apply_baseline_correction() (in module xpectrass.utils.baseline) apply_denoising() (in module xpectrass.utils.denoise)

apply_scatter_correction() (in module xpectrass.utils.scatter_correction) atmospheric_correction() (in module xpectrass.utils.atmospheric) atmospheric_correction_spectrum() (in module xpectrass.utils.atmospheric) auto_scale() (in module xpectrass.utils.normalization)

B

baseline_correction() (in module xpectrass.utils.baseline)

baseline_method_names() (in module xpectrass.utils.baseline)

C

check_wavenumber_consistency() (in module xpectrass.utils.data_validation)

D

denoise() (in module xpectrass.utils.denoise) denoise_method_names() (in module xpectrass.utils.denoise) derivative_batch() (in module xpectrass.utils.derivatives)

derivative_with_smoothing() (in module xpectrass.utils.derivatives) detect_outlier_spectra() (in module xpectrass.utils.data_validation) detrend() (in module xpectrass.utils.normalization)

E

estimate_snr() (in module xpectrass.utils.denoise) evaluate_baseline_correction_methods() (in module xpectrass.utils.baseline) evaluate_denoising_methods() (in module xpectrass.utils.denoise) evaluate_denoising_methods_safe() (in module xpectrass.utils.denoise)

exclude_and_interpolate_regions() (in module xpectrass.utils.atmospheric) exclude_and_interpolate_spectrum() (in module xpectrass.utils.atmospheric) exclude_atmospheric() (in module xpectrass.utils.region_selection) exclude_regions() (in module xpectrass.utils.region_selection)

F

find_best_baseline_method() (in module xpectrass.utils.baseline)

find_best_denoising_method() (in module xpectrass.utils.denoise) first_derivative() (in module xpectrass.utils.derivatives)

G

gap_derivative() (in module xpectrass.utils.derivatives) get_region_names() (in module xpectrass.utils.region_selection)

get_region_range() (in module xpectrass.utils.region_selection) get_spectra_matrix() (in module xpectrass.utils.region_selection) get_wavenumbers() (in module xpectrass.utils.region_selection)

I

identify_atmospheric_features() (in module xpectrass.utils.atmospheric) import_data() (in module xpectrass.utils.file_management)

import_data_pd() (in module xpectrass.utils.file_management) import_data_pl() (in module xpectrass.utils.file_management)

M

mean_center() (in module xpectrass.utils.normalization) module xpectrass.utils.atmospheric xpectrass.utils.baseline xpectrass.utils.data_validation xpectrass.utils.denoise xpectrass.utils.derivatives xpectrass.utils.file_management xpectrass.utils.normalization xpectrass.utils.region_selection xpectrass.utils.scatter_correction

msc_single() (in module xpectrass.utils.scatter_correction)

N

normalize() (in module xpectrass.utils.normalization) normalize_adaptive_regional() (in module xpectrass.utils.normalization) normalize_curvature_weighted() (in module xpectrass.utils.normalization) normalize_derivative_ratio() (in module xpectrass.utils.normalization) normalize_df() (in module xpectrass.utils.normalization) normalize_entropy_weighted() (in module xpectrass.utils.normalization) normalize_method_names() (in module xpectrass.utils.normalization)

normalize_novel() (in module xpectrass.utils.normalization) normalize_peak_envelope() (in module xpectrass.utils.normalization) normalize_pqn() (in module xpectrass.utils.normalization) normalize_robust_snv() (in module xpectrass.utils.normalization) normalize_signal_to_baseline() (in module xpectrass.utils.normalization) normalize_spectral_moments() (in module xpectrass.utils.normalization) normalize_total_variation() (in module xpectrass.utils.normalization) novel_normalize_method_names() (in module xpectrass.utils.normalization)

P

pareto_scale() (in module xpectrass.utils.normalization) plot_baseline_correction_metric_boxes() (in module xpectrass.utils.baseline) plot_baseline_correction_metric_boxes_masked() (in module xpectrass.utils.baseline) plot_denoising_comparison() (in module xpectrass.utils.denoise)

plot_denoising_evaluation() (in module xpectrass.utils.denoise) plot_denoising_evaluation_summary() (in module xpectrass.utils.denoise) plot_derivatives() (in module xpectrass.utils.derivatives) process_batch_files() (in module xpectrass.utils.file_management)

S

scatter_correction() (in module xpectrass.utils.scatter_correction) scatter_method_names() (in module xpectrass.utils.scatter_correction) second_derivative() (in module xpectrass.utils.derivatives) select_region() (in module xpectrass.utils.region_selection)

select_region_np() (in module xpectrass.utils.region_selection) select_regions_np() (in module xpectrass.utils.region_selection) snv_detrend() (in module xpectrass.utils.normalization) spectral_derivative() (in module xpectrass.utils.derivatives)

V

validate_spectra() (in module xpectrass.utils.data_validation)

X

xpectrass.utils.atmospheric module xpectrass.utils.baseline module xpectrass.utils.data_validation module xpectrass.utils.denoise module xpectrass.utils.derivatives module

xpectrass.utils.file_management module xpectrass.utils.normalization module xpectrass.utils.region_selection module xpectrass.utils.scatter_correction module